PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015085.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 290aa    MW: 30432 Da    PI: 5.6499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015085.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.5e-09212253955
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Do015085.1 212 AKVRRERIAEKLKVLQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 253
                 589*****************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.322203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-12204261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-12205264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-11205257No hitNo description
SMARTSM003532.5E-10209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-6213253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAQAASKRSA MQPQLRPVIY DDEPSSMSLE LFGYHGVVVD GDEGDGSAAA LSLQLAFDDD  60
NFKGASASDY YSSWAGAYGA SGASSSSSSS VLSFEQAGSG EHHHLPYGDD GCALWIDAAA  120
GMVEHPAQQQ HGSAACRFGL VSPGSSADND DAGLRIQELV GSVQPPAKAT NKRARPDCEV  180
QAAAAKKQCG GARKSKAKAA PAPTKDPQSV AAKVRRERIA EKLKVLQDLV PNGTKVDLVT  240
MLEKAITYVK FLQLQVKVLA ADEFWPAQGG KAPELSQVKD ALDAILSSQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455315.11e-144hypothetical protein SORBIDRAFT_03g008290
TrEMBLC5XEV71e-144C5XEV7_SORBI; Putative uncharacterized protein Sb03g008290
STRINGSb03g008290.11e-144(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-44ROOT HAIR DEFECTIVE6